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3d-brain-segmentation

This is a repository containing code to Paper "Optimized High Resolution 3D Dense-U-Net Network for Brain and Spine Segmentation" published at MDPI Applied sciences journal - https://www.mdpi.com/2076-3417/9/3/404 .

3dmmasstn-pytorch

Unofficial PyTorch implementation for incorporating a 3D Morphable Model (3DMM) into a Spatial Transformer Network (STN)

3phase_integrated

3-phase motor controller with integrated position sensor

abdominal-multi-organ-segmentation

abdominal multi-organ segmentation using pytorch

airlab

Image registration laboratory for 2D and 3D image data

automatic_pulmonary_lobe_segmentation_using_deep_learning

bone-segmenter

Bone segmentation in CT scans using Deep Convolutional Neural Networks

cheetah-software

deepreg

Medical image registration using deep learning

disk-vertebra-segmentation-deeplearning

Inter-vertebral disc modelling Using pre-processing networks based on deep ResUNet

elastix

Official elastix repository

fair.m

Flexible Algorithms for Image Registration

icpcuda

Super fast implementation of ICP in CUDA for compute capable devices 2.0 or higher

intan-rhx

Intan RHX is free, powerful data acquisition software that displays and records electrophysiological signals from any Intan RHD or RHS system using an RHD USB interface board, RHD recording controller, or RHS stim/recording controller

istn

Image-and-Spatial Transformer Networks

jupytervtk

Interactive Notebook for 3D Visualization of VTK files

kilosort

Fast spike sorting with drift correction for up to a thousand channels

leeml-notes

李宏毅《机器学习》笔记，在线阅读地址：https://datawhalechina.github.io/leeml-notes

lits---liver-tumor-segmentation-challenge

LiTS - Liver Tumor Segmentation Challenge

lobesegmentation

medicalnet

Many studies have shown that the performance on deep learning is significantly affected by volume of training data. The MedicalNet project provides a series of 3D-ResNet pre-trained models and relative code.

mirtk

The Medical Image Registration ToolKit (MIRTK), the successor of the IRTK, contains common CMake build configuration files, core libraries, and basic command-line tools. Extension packages are hosted by the MIRTK GitHub group at

miscnn

A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning

niftynet

[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy

niftyreg

This project contains command line tools to perform rigid, affine and non-linear registration of nifti or analyse images as well as utilities

object-tracking-in-3-dimensional-space

An object is moving in 3D space and we want to track that by using Extended Kalman Filter

osirixplugins

Plugins for OsiriX DICOM Viewer

plaidml

PlaidML is a framework for making deep learning work everywhere.

pytorch-iterativefcn

Pytorch implementation of the paper Iterative fully convolutional neural networks for automatic vertebra segmentation accepted in MIDL2018.

regnet

Nonrigid image registration using multi-scale 3D convolutional neural networks