linnabrown Goto Github PK

acr_aca_visualization

autogroup

Split your big directory [1,2,...,n] into pieces of small directory[1:[1,2,3], 2:[4,5,6], ... n[n+3, n+4, n+5]]

bash_tricks

Bash files that may useful in the future.

bioconda-recipes

Conda recipes for the bioconda channel.

cifar10-fast

comp790-166-comp-bio

Computational Biology- Spring 2021

comp790-melody

Those readme contains our generated polyphonic MIDI format data from COMP 790 Lecture. Those data are in midi format and you can listen to it.

comp790_101_hw3_figure

daily-llama

meta's LLMA-2 based chat framework, optimized for latest news contents.

dotfiles

cd && git clone --bare https://github.com/craffel/dotfiles.git .dotfiles && git --git-dir=.dotfiles --work-tree=. checkout

error_data

The 17th sequence of fna File run against CRISPRCasFinder encounter traceback error

gin

Gin is a HTTP web framework written in Go (Golang). It features a Martini-like API with much better performance -- up to 40 times faster. If you need smashing performance, get yourself some Gin.

glmnetplus

glmnet package with initialization

gmvc

minimum vertex cover algorithm applied to human genetic kinship data (genetic_minimum_vertex_cover)

gwas-lecture

Lectures on Genome Wide Association Studies (GWAS) using Python, Limix and Jupyter Noteboos

hicplus_revised

This is revised scripts of hicplus

hmmer

Use hmmscan and scanparse to create hmmer result

learning_pytorch

A repository for pytorch learning

linnabrown

linnabrown.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

machinelearning

my machine learning class

mmsegmentation

OpenMMLab Semantic Segmentation Toolbox and Benchmark.

myself

needleman

Global Needleman–Wunsch algorithm using Perl

new_repo

plink-ng

A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Development is now focused on building out support for multiallelic, phased, and dosage data in PLINK 2.0.

pretty-midi

Utility functions for handling MIDI data in a nice/intuitive way.

pyinfor

some of my codes on bioinformatics with python

run_dbcan

Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data