lindechun Goto Github PK

afterqc

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

anvio

An analysis and visualization platform for 'omics data

clustering-tool-for-nucleotide-sequences-using-laplacian-eigenmaps-and-gaussian-mixture-models

Clustering tool for nucleotide sequences using Laplacian Eigenmaps and Gaussian Mixture Models

codonm

Comparative analysis pipeline of Population's Codon Usage

core-genome-alignment

Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.

fastqqc

Data preprpcessing pipeline of raw sequencing data.

geoplot

High-level geospatial data visualization library for Python.

hangzhouyunqi2017ppt

khmer

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

lissero

In silico serotype prediction for Listeria monocytogenes

molokai

Molokai color scheme for Vim

most

octotree

Code tree for GitHub and GitLab

pan-genome-analysis

Processing pipeline for pan-genome visulization and exploration

pan-genome-visualization

perl_examine

plottree

pneumoserotyper

Program for inferring S pnemoniae serotypes from whole genome sequences/assemblies

programing

personal files

pypeflow

a simple lightweight workflow engine for data analysis scripting

python-fire

Python Fire is a library for automatically generating command line interfaces (CLIs) from absolutely any Python object.

r-plot

A simple plot library based on `bash`, `R` mainly `ggplot2` to make the plot easily and flexibly

r_course

my own R course

r_graphics_cookbook

翻译以及R Graphics Cookbook的代码

reseqtools

A Toolkit for analyzing next-generation DNA Re-Sequencing data

rice

🍚 A 21 century R console

scripts

Miscellaneous scripts

seqkit

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang

seqsero

Salmonella serotyping from genome sequencing data

seqsero2

SeqSero2 alpha test