lilab-bcb Goto Github PK

altocumulus

Command line tool for submitting WDL jobs to Terra or Cromwell server.

anndata

Annotated data.

aws-genomics-workflows

Genomics Workflows on AWS

backedarray

Sparse csc and csr arrays backed by on-disk storage in Zarr or HDF5

bbknn

Batch balanced KNN

bcb-dockers

bioconda-recipes

Conda recipes for the bioconda channel.

cirrocumulus

Bring your single-cell data to life

cirrocumulus-app-engine

cumulus

Cloud-based scalable and efficient single-cell genomics workflows

cumulus-experiment

cumulus_feature_barcoding

demuxem

Demultiplexing cell/nucleus hashing data for single-cell genomics

fishers_exact_test

Fishers Exact Test for Python (Cython)

harmony-pytorch

harmonypy

🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.

hnswlib

Header-only C++/python library for fast approximate nearest neighbors

lilab-bcb.github.io

Dr. Bo Li's lab website

louvain-feedstock

A conda-smithy repository for louvain.

louvain-igraph

Implementation of the Louvain algorithm for community detection with various methods for use with igraph in python.

merge-test

multicore-tsne

Parallel t-SNE implementation with Python and Torch wrappers.

nmf-torch

pegasus

A tool for analyzing trascriptomes of millions of single cells.

pegasus-test-data

Data used for CI test of pegasus repo

pegasus-tutorials

Tutorial notebooks of Pegasus

pegasusio

pegasus io module for reading/writing single-cell genomics data

pegasusio-test-data

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

sccoda

A statistical test for compositional changes in scRNA