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classify_core-accessory

python code to parse MUMmer output and classify genomic regions as 'core' or 'accessory' depending on whether a region aligns to a large enough set of other genome sequences.

foec

Fusarium oxysporum effector clustering (FoEC) is a pipeline to identify candidate effector genes in a set of F. oxysporum genomes and apply hierarchical clustering on the presence-absence pattern of these genes.

fosc_multi-speed-genome

likefokkens.github.io

Build a Jekyll blog in minutes, without touching the command line.

organization-genomics

pyinfor

some of my codes on bioinformatics with python

python-ecology-lesson

:page_with_curl: Data Carpentry Python lessons on ecology.

python-novice-inflammation

Software Carpentry introduction to Python for novices using inflammation data.

siz1_immunity-vs-growth_temperature

studygroup

Gather together a group to skill-share, co-work, and create community

valerie_en_like

whole_genome_alignments

python scripts to generate to generate all-against-all alignments of a set of genomes

workshop-template

Template for workshop websites.