Comments (2)
Dear @mbarzegary - see comments below:
- I cannot find the FEniCS functionality being tested via the pytest tests. Is it because of the complicated installation procedure? I care about this functionality not only due to its usefulness but also because it's mentioned in the paper.
FEniCS is not testes via pytest because of the complicated installation procedure. However, we now added a test to github actions that essentially runs the FEniCS examples that are provided for testing (@jotelha).
- All tests pass on my local machine, but some of them produce unclear characters. This is the output of the pytest run:
Some tests were skipped ('s'), likely because atomman
and ovito
was not installed. We now added those packages to the test dependencies.
Note that some changes are in PR #208 and not yet in master.
from matscipy.
Fenics installation is indeed not of negligible effort, in particular since the fenics integration only plays a role in one of several sub-modules. I have added a test on fenics integration with #213. The test is skipped if fenics is not available.
from matscipy.
Related Issues (20)
- [JOSS Review] Paper and statement of need HOT 2
- [JOSS Review] Reproducibility and functionality HOT 1
- [JOSS Review] Documentation HOT 2
- JOSS Review: Examples and Tutorials HOT 1
- Editable install won't run HOT 1
- Documentation appearance HOT 3
- Generalise surface reconstruction code
- Conda-forge build not working for version 0.8.0 HOT 5
- Some fenics log messages are written to stdout instead of stderr HOT 1
- Autogenerate documentation previews on pull requests in CI
- v0.8.1 and v0.9.0 releases HOT 4
- Part of the electrochemistry module does not follow coding style HOT 2
- TST: electrochemistry CLI pipe output test fails in CI ... HOT 3
- Building documentation requires Fenics HOT 4
- Interactive visualisation of atomic structures in documentation is broken HOT 12
- Clean up extra files created by running docs + tests HOT 7
- Improve performance of unittests
- Switch arm64 from Cirrus to GHA HOT 1
- Pair potential for the real part of the Ewald sum HOT 2
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from matscipy.