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bijectors.jl

Implementation of normalising flows and constrained random variable transformations

biopython

Official git repository for Biopython (converted from CVS)

catalyst.jl

Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software

clde

Common Lisp Differential Evolution

clode

Common Lisp interface to the GSL ordinary differential equation solvers

diffeqjump.jl

Build and simulate jump equations like Gillespie simulations and jump diffusions with constant and state-dependent rates

fcsfiles.jl

Read Flow Cytometry Standard (FCS) files in Julia

finitestateprojection.jl

Finite State Projection algorithms for chemical reaction networks

flowio

A Python library for reading and writing Flow Cytometry Standard (FCS) files

graphrecipes.jl

Graph-related recipes to be used with Plots.jl

intervalarithmetic.jl

Rigorous floating-point calculations using interval arithmetic in Julia

julia

The Julia Language: A fresh approach to technical computing.

khmer

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

lgrozinger.github.io

libssa

Stochastic Simulation algorithms in C

model-zoo

Please do not feed the models

nsmerl

py_lectures

pyolin

pyolin.jl

pysbolgraph

rdfscript

sivia.jl

Set Inversion Via Interval Analysis

ssapy

symbolicregression.jl

Distributed High-Performance symbolic regression in Julia

tadbit

TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from

tfg

Código desarrollado para el trabajo de fin de grado "Identificación de efectores dependientes de sistemas de secreción tipo VI en rizobios mediante análisis genómico de adaptadores"

thesis-scripts

Scripts which generate figures or results shown in the manuscript

vgplot

Common lisp library interfacing to the gnuplot utility