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2022-qupath-cell-detection

Images & code to visualize to illustrate the challenges image analysis in pathology

3d_unet_mri

TensorFlow implementation of 3D UNet for medical image segmentation

angel

Robust Open Reading Frame prediction (ANGLE re-implementation)

barcoding

Lima - Demultiplex Barcoded PacBio Samples

cdna_cupcake

Miscellaneous collection of Python and R scripts for processing Iso-Seq data

cell-neighborhood-analysis

center-dot

Center Dot is a Windows application that renders a dot in the center of the screen. Useful for PC games that do not provide a crosshair.

ck_virtual_staining_paper

transform H&E image into CK image using GAN (virtual staining)

cwl

data_science_industrial_practice

《数据科学工程实践》一书的Jupyter Notebook库，以及交流园地。

datasciencestudynotes

这个仓库保管从（数据科学学习手札69）开始的所有代码、数据等相关附件内容

deeplearningcamelyon

DeepLearning - Camelyon16 dataset

devnet

The DevNet project on github stores the PacBio DevNet website.

digipathai

Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay

docker-openclinica

OpenClinica 3.11 for Docker

docker-openclinica-db

Postgres DB for OpenClinica

easy_slam_tutorial

首个中文的简单从零开始实现视觉SLAM理论与实践教程，使用Python实现。包括：ORB特征点提取，对极几何，视觉里程计后端优化，实时三维重建地图。A easy SLAM practical tutorial (Python).图像处理、otsu二值化。更多其他教程我的CSDN博客

ecdict

Free English to Chinese Dictionary Database

effective_cpp

fastq2dcc

Install the GeoMxNGSPipeline_Linux_2.0.0.16 tool from Nanostring/illumina to docker container, and convert it to Singularity.

flutter-bible

A Bible app built in flutter

flutter-plugins

🧱 Flutter plugins used in Mixin Messenger.

frequencywords

Repository for Frequency Word List Generator and processed files

genomegtftools

convert various features into a GFF-like file for use in genome browsers

genstats

Statistics course for JHU Genomic Data Science Sequence

image_processing

Image Processing techniques using OpenCV and Python.

io_lib

Staden Package "io_lib" (sometimes referred to as libstaden-read by distributions). This contains code for reading and writing a variety of Bioinformatics / DNA Sequence formats.

isoseq

IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads

machine-learning

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences