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leonfrench's Projects

abams icon abams

Code to analyse the Brain Architecture Management System and Allen Brain Atlas datasets.

ad-allen-fdg icon ad-allen-fdg

Transcriptomic analysis of brain hypometabolism links the cholinergic and gingipain hypotheses of Alzheimer’s disease pathogenesis

alleleintegrator icon alleleintegrator

R package to generate allele specific counts for scRNA data and use it to identify cancer cells

allenbrain icon allenbrain

:mouse: Acquiring images from allen brain atlas, mouse ISH experiments in R.

clp_shared_task_code icon clp_shared_task_code

CLPsych shared task feature generation and TPOT based code for the 2017 submissions by Derek Howard, Jacob Ritchie, Geoffrey Woollard and Leon French. This repository contains no task data, only source code.

go_enrichment_tool icon go_enrichment_tool

A tool used to analyze GO term enrichment in a set of ranked genes using AUROC scores.

homologene icon homologene

An r package that works as a wrapper to homologene

inactivexx icon inactivexx

Detect X-inactivation status in single cell transcriptomes

metaneighbor icon metaneighbor

A method to rapidly assess cell type identity using both functional and random gene sets

mini-ex icon mini-ex

Motif-Informed Network Inference of cell type-specific gene regulatory networks in plants

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