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forwardgenomics icon forwardgenomics

Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework

gb2ptt icon gb2ptt

Convert a Genbank flat file to an NCBI ptt file

gbk2ptt icon gbk2ptt

Converts a GenBank file (*.gbk) to an NCBI Protein Table (*.ptt) file

gggenomes icon gggenomes

A grammar of graphics for comparative genomics

repeatmasker icon repeatmasker

RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.

roary icon roary

Rapid large-scale prokaryote pan genome analysis

utilities icon utilities

These are a collection of scripts we commonly use on the command line for exploring data and for documentation

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