Git Product home page Git Product logo

Comments (4)

lcolladotor avatar lcolladotor commented on May 20, 2024

Hi @bounlu,

Could you provide a small reproducible example please as well as your R session information? Thanks!

It could be that port 80 is blocked in the wifi you are using, so maybe trying with a different internet connection will help.

Best,
Leonardo

from regionreport.

bounlu avatar bounlu commented on May 20, 2024

It sometimes works sometimes does not. I am connected via a fixed ip on the server.

dds = DESeqDataSetFromMatrix(countData = counts_table, colData = samples_anno, design = ~ group)
dds = dds[rowSums(counts(dds)) > 1, ]
dds = DESeq(object = dds)
dds_res = results(dds, contrast = c("group", "Group1", "Group2"))
dds_res = dds_res[order(dds_res$padj), ]
suppressWarnings(DESeq2Report(dds, project = project, intgroup = "sampleLabel", res = dds_res, output = label, outdir = out_dir))


> sessionInfo()
R version 3.5.1 (2018-07-02)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.5 LTS

Matrix products: default
BLAS: /usr/lib/libblas/libblas.so.3.6.0
LAPACK: /usr/lib/lapack/liblapack.so.3.6.0

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
[1] compiler_3.5.1

$ ping crossref.org
PING crossref.org (88.198.200.74) 56(84) bytes of data.
64 bytes from static.88-198-200-74.clients.your-server.de (88.198.200.74): icmp_seq=1 ttl=48 time=181 ms
64 bytes from static.88-198-200-74.clients.your-server.de (88.198.200.74): icmp_seq=2 ttl=48 time=178 ms
64 bytes from static.88-198-200-74.clients.your-server.de (88.198.200.74): icmp_seq=3 ttl=48 time=178 ms
^C
--- crossref.org ping statistics ---
3 packets transmitted, 3 received, 0% packet loss, time 2002ms
rtt min/avg/max/mdev = 178.231/179.348/181.362/1.508 ms

$ ping data.crossref.org
PING data.crossref.org (208.254.38.85) 56(84) bytes of data.
^C
--- data.crossref.org ping statistics ---
5 packets transmitted, 0 received, 100% packet loss, time 4100ms

from regionreport.

lcolladotor avatar lcolladotor commented on May 20, 2024

How did you create those objects? I was looking for something that I can run and see the error myself to try to debug. If you want to, subset those objects or prepare some random data where you also see the error and send it to me via email.

Best,
Leonardo

from regionreport.

lcolladotor avatar lcolladotor commented on May 20, 2024

I'm closing this issue since we haven't heard back from the issue author.

from regionreport.

Related Issues (9)

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.