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Leah Briscoe's Projects

cs122 icon cs122

Final Project for CS122 Bioinformatics Algorithms

cs124 icon cs124

Global ancestry mapping using genotype data from both known and unknown populations.

figaro icon figaro

An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters

implementationstudygrossmann2016 icon implementationstudygrossmann2016

Replicating computation of modules of molecular pathways and imaging features. Assessing stability of the Iterative Signature Algorithm for producing modules.

knn-smoothing icon knn-smoothing

K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data

radiogx icon radiogx

RadioGx and PharmacoGx: Integrated prediction tools for combining radiotherapy with systemic agents

snp_scoring_model icon snp_scoring_model

Compute variant scores for each variant site in input file, based on basic and advanced variant scoring model written in Python. Also compute log posterior probability density.

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