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ambigauss

Generic multi-peak fitter in Python

antho-comp-evo-materials

This repository contains the supplement files referenced in "Computational modeling of anthocyanin pathway evolution".

arboretum2.0

The Arboretum 2.0 is the next release of the original code of Arboretum. It makes running Arboretum easier by taking care of initial cluster assignments.

augur

Pipeline components for real-time phylodynamic analysis

biorxiv-latex-template

LaTeX template to create a compiled PDF (text+figures) e.g. for bioRxiv.org

cellular_automata

climate

Mirror of Apache Open Climate Workbench

clust

Automatic and optimised consensus clustering of one or more heterogeneous datasets

covid-19

Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

covid19-vent-list

A list projects to make emergency ventilators in response to COVID-19, focusing on free-libre open source

curriculum_vitae

My CV

deep-learning-with-python-notebooks

Jupyter notebooks for the code samples of the book "Deep Learning with Python"

dissertation

Lucas C. Wheeler's PhD Dissertation

dna-seq-gatk-variant-calling

This Snakemake pipeline implements the GATK best-practices workflow

dnds

economic-models

A repo of simple economic models

emissions-estimator

A Jupyter notebook containing functions that allow the user to estimate their annual CO2 emissions

enzo

enzo is a Python wrapper for Tellurium allowing evolution of metabolic models between defined states

gpmap

A Python API for managing genotype-phenotype map data

guide-to-working-as-team-on-github

A quick guide to working as a team on Github

herbivory-defense-simulation

A computational approach to model the evolution of herbivory defense compounds in plants.

hts-analysis-tools

Tools for parsing high-throughput sequencing data (specifically geared toward phage display)

info-graphics

kmertime

Simple Python package for extracting kmer counts from sequence data

lcwheeler.github.io

:sparkles: Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll

mesa

Mesa is an agent-based modeling framework in Python

ndlib

Network Diffusion Library - (for NetworkX and iGraph)

non-linear-dynamics-strogatz

Python scripts connected to Strogatz's nonlinear dynamics and chaos theory text.

nx_altair

Draw NetworkX graphs with Altair

old-website

Build a Jekyll blog in minutes, without touching the command line.