fail to install the graphmap2 v0.6.4 about graphmap2 HOT 6 OPEN

Hi,

What are the steps you used to build the program?
Let me know so I can see what the error could be.

Also what is the command you use to map reads to the reference?
If you are trying to map RNA reads you have to use -x rnaseq option.
If you are mapping DNA reads, you can try old Graphmap since it is the same for DNA reads as this one.

from graphmap2.

Thanks, @jmaricb. I failed in the "make" step in installing graphmap2 (v0.6.4). The error information is shown above.
Then I installed the v0.6.3 version by bioconda and it worked.

from graphmap2.

I am not sure why the make command fails, maybe something with the compiler version on your machine.

Tell me, are you running the command with '-x rnaseq' parameter?

from graphmap2.

Thanks, @jmaricb. I am trying to map the DNA read.
But no reads are aligned against the reference genome. Similar problem is described by issue #10 .

from graphmap2.

Hi,

use the previous version of Graphmap: https://github.com/isovic/graphmap

There is no difference for the DNA reads in Graphmap2, and the previous version will work.

from graphmap2.

Thanks, @jmaricb. I will try to use the previous version.

from graphmap2.