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bioconda-recipes

Conda recipes for the bioconda channel.

crisprseq

[Under construction] A pipeline for all crispr analyses

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

multi-package-containers

Testing building mulled containers for multi-requirement tools.

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

nanoseq

Nanopore demultiplexing, QC and alignment pipeline

network_project

pipeline-docs

Docs for QBiC pipelines

poolqcrisprcleanr

Takes the output of the poolq software and runs crisprcleanR for synthetic lethal screens

r-container-lib

A collection of project-related Dockerfiles for a controlled R environment with defined R packages

regorafenib_manuscript_design_matrices

rmageddon-cli

A small linting command line tool for R container evaluation

rnadeseq

Differential gene expression analysis and pathway analysis of RNAseq data

shrnacount

test-datasets

Test data to be used for automated testing with the nf-core pipelines

vcflib

C++ library and cmdline tools for parsing and manipulating VCF files

vcgermline

Report for germline Variant Calling

vcreport