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amath_50_workshop1

antiviralscovid19

Repository for the paper entitled "The role of antiviral treatment in curbing the COVID-19 pandemic: a modeling study."

aspire

bioinfclass-sample-project

cati

concepts_machine_learning

four week intro to machine learning

courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

covid19antivirals

This repository contains the data from the paper "Could widespread use of antiviral treatment curb the COVID-19 pandemic? A modeling study."

covid_19_eid

code used to generate the model described in "Evaluating the Effectiveness of Social Distancing Interventions to Delay or Flatten the Epidemic Curve of Coronavirus Disease", EID, 2020

data

Data needed for COVID-19 projects

datasciencespcoursenotes

Compiled Notes for all 9 courses in the Coursera Data Science Specialization

datasharing

The Leek group guide to data sharing

developing_data_products

Developing Data Products Course from the Johns Hopkins Data Science Lab

exdata_plotting1

Plotting Assignment 1 for Exploratory Data Analysis

exploratory_data_analysis

getting_and_cleaning_data_final_assignment

haiticholeramultimodelingproject

Code used to generate the model/output/etc used in the multi-modeling exercise for Haiti mass-vaccination.

hello-world

my first repository

httr

httr: a friendly http package for R

idm-symposium-2023

Sample code for the IDM Spring 2023 disease modeling symposium.

inequities_flu_hospitalizations

module5

monkeypox

code from the paper "Evaluating the use of dose-sparing vaccination strategies for Monkeypox"

one_vs_two_doses

polio-siv-model

Polio Model for AJE publication

practicalmachinelearning

programmingassignment2

Repository for Programming Assignment 2 for R Programming on Coursera

reopening_short_paper

This is the repository of files used in the manuscript entitled "Quantifying the Impact of Lifting Community Nonpharmaceutical Interventions for COVID-19 During Vaccination Rollout in the United States", https://academic.oup.com/ofid/article/8/7/ofab341/6311669, Open Forum Infectious Diseases, 2021

repdata_peerassessment1

Peer Assessment 1 for Reproducible Research

sismid

Pathogen evolution, selection and immunity