Code compiles but I get the following error when I launch it: <div class="snippet-

Ouch core dump indeed... <div class="snippet-clipboard-content notranslate positio

Error at runtime about pybind_mpi HOT 3 OPEN

mathaefele commented on August 18, 2024

Error at runtime

from pybind_mpi.

Comments (3)

latug0 commented on August 18, 2024

Is python3 in your PATH (which python3)?
Can you test the simpler command python3 helloWorld.py that should use a single MPI process and give me the output ?

from pybind_mpi.

mathaefele commented on August 18, 2024

Ouch core dump indeed...

mhaefele@mdlspc113:build (master)*$ which python3
/usr/bin/python3

mhaefele@mdlspc113:build (master)*$ python3 helloWorld.py 
[Python] Hello from machine mdlspc113, MPI rank 0 out of 1
[mdlspc113:31758] *** Process received signal ***
[mdlspc113:31758] Signal: Segmentation fault (11)
[mdlspc113:31758] Signal code: Address not mapped (1)
[mdlspc113:31758] Failing at address: 0x44000098
[mdlspc113:31758] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7fde5ec39f20]
[mdlspc113:31758] [ 1] /usr/lib/x86_64-linux-gnu/libmpi.so.20(MPI_Comm_size+0x42)[0x7fde5d3423b2]
[mdlspc113:31758] [ 2] /local/home/mhaefele/ownCloud/work/dev/pybind_mpi/build/mpi_lib.cpython-36m-x86_64-linux-gnu.so(+0x1e38b)[0x7fde4b9ab38b]
[mdlspc113:31758] [ 3] /local/home/mhaefele/ownCloud/work/dev/pybind_mpi/build/mpi_lib.cpython-36m-x86_64-linux-gnu.so(+0x26347)[0x7fde4b9b3347]
[mdlspc113:31758] [ 4] /local/home/mhaefele/ownCloud/work/dev/pybind_mpi/build/mpi_lib.cpython-36m-x86_64-linux-gnu.so(+0xbdf3)[0x7fde4b998df3]
[mdlspc113:31758] [ 5] /local/home/mhaefele/ownCloud/work/dev/pybind_mpi/build/mpi_lib.cpython-36m-x86_64-linux-gnu.so(+0x7cdc)[0x7fde4b994cdc]
[mdlspc113:31758] [ 6] /local/home/mhaefele/ownCloud/work/dev/pybind_mpi/build/mpi_lib.cpython-36m-x86_64-linux-gnu.so(+0x2b148)[0x7fde4b9b8148]
[mdlspc113:31758] [ 7] /local/home/mhaefele/ownCloud/work/dev/pybind_mpi/build/mpi_lib.cpython-36m-x86_64-linux-gnu.so(+0x2b26c)[0x7fde4b9b826c]
[mdlspc113:31758] [ 8] /local/home/mhaefele/ownCloud/work/dev/pybind_mpi/build/mpi_lib.cpython-36m-x86_64-linux-gnu.so(+0x1c15f)[0x7fde4b9a915f]
[mdlspc113:31758] [ 9] python3(_PyCFunction_FastCallDict+0x35c)[0x5674fc]
[mdlspc113:31758] [10] python3[0x50abb3]
[mdlspc113:31758] [11] python3(_PyEval_EvalFrameDefault+0x449)[0x50c5b9]
[mdlspc113:31758] [12] python3[0x509d48]
[mdlspc113:31758] [13] python3[0x50aa7d]
[mdlspc113:31758] [14] python3(_PyEval_EvalFrameDefault+0x449)[0x50c5b9]
[mdlspc113:31758] [15] python3[0x508245]
[mdlspc113:31758] [16] python3(PyEval_EvalCode+0x23)[0x50b403]
[mdlspc113:31758] [17] python3[0x635222]
[mdlspc113:31758] [18] python3(PyRun_FileExFlags+0x97)[0x6352d7]
[mdlspc113:31758] [19] python3(PyRun_SimpleFileExFlags+0x17f)[0x638a8f]
[mdlspc113:31758] [20] python3(Py_Main+0x591)[0x639631]
[mdlspc113:31758] [21] python3(main+0xe0)[0x4b0f40]
[mdlspc113:31758] [22] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7fde5ec1cb97]
[mdlspc113:31758] [23] python3(_start+0x2a)[0x5b2fda]
[mdlspc113:31758] *** End of error message ***
Erreur de segmentation (core dumped)
mhaefele@mdlspc113:build (master)*$

I did not install packages with spack I must admit. I just installed the ubuntu packages and there might be some incompatibilities... I will have a try with spack and I come back.

from pybind_mpi.

latug0 commented on August 18, 2024

Without spack, the documentations I read specify that mpi4py should be built on the specific MPI available on the system. Maybe you can try a pip install of mpi4py.

Can you give me the variant/version of mpi you use please ?

from pybind_mpi.

Error at runtime about pybind_mpi HOT 3 OPEN

Comments (3)

Related Issues (1)

Recommend Projects

React

Vue.js

Typescript

TensorFlow

Django

Laravel

D3

Recommend Topics

javascript

web

server

Machine learning

Visualization

Game

Recommend Org

Facebook

Microsoft

Google

Alibaba

D3

Tencent