Comments (1)
Fixed in #37
from single-cell-experiments.
Related Issues (16)
- Convert 10x data to zarr HOT 2
- Convert various single-cell formats to zarr
- Move scanpy_spark.py into a fork of scanpy HOT 2
- Add a Python linter to the build process HOT 3
- Track code coverage for unit tests
- Investigate different compute engines for running python HOT 3
- Create Jupyter notebook to demonstrate scanpy on Dask HOT 1
- Add zarr support to anndata HOT 2
- Use upstream Anndata that contains Zarr support HOT 1
- Travis fails with "No module named 'pandas'" HOT 1
- Remove git submodules for Python forks HOT 1
- Load/save anndata (backed by zarr) as Spark RDDs of numpy arrays HOT 1
- Adapt scanpy preprocessing functions to work on anndata RDDs HOT 1
- Run Zheng17 Scanpy recipe on 10x Zarr data in the cloud HOT 1
- Create Jupyter notebook to demonstrate scanpy on Spark
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from single-cell-experiments.