Comments (5)
ktmeaton
commented on May 23, 2024
I'm quite proud of my progress so far:
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ktmeaton
commented on May 23, 2024
One more cool thing, would be to plot the breakpoints of all lineages I've curated in resources/breakpoints.tsv
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ktmeaton
commented on May 23, 2024
Even better, all designated and proposed recombinants so far:
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ktmeaton
commented on May 23, 2024
I think "stacking" the distributions is mislead, although I like the aesthetic. I'll try overlaying instead.
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ktmeaton
commented on May 23, 2024
I chose to use separate axes for the distribution of each parent.
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Related Issues (20)
- Provider more parameters to plot and plot_historical to reduce clutter
- Add GISAID accessKey option for sc2rf
- CI: setup-miniconda failure
- UserWarning: Tight layout not applied. The bottom and top margins cannot be made large enough to accommodate all axes decorations. HOT 1
- validate doesn't check status
- VOC 2023
- Immune Escape Ranking HOT 1
- VirusSeq Canada HOT 2
- Auto-pass sc2rf negatives are missing when exclude_negatives is set to true HOT 2
- Add citation CFF
- AttributeError: 'NoneType' object has no attribute 'startswith'
- proposed1658 | BQ.1.8, XBF(?) or CJ.1(?) HOT 1
- Add XBF to sc2rf voc-2023 now that is a VUM according to WHO
- Investigate the incorporation of OpenRDP
- Make metadata 100% optional.
- Recombinant aliases (EK = XBB.1.5.13)
- Nextclade dataset download error
- Investigate use of freyja barcodes
- IndexError: list index out of range
- Use pango-sequences data as controls
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