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ktmeaton avatar ktmeaton commented on May 23, 2024

I might file these as separate issues for tracking which controls I've added.

from ncov-recombinant.

ktmeaton avatar ktmeaton commented on May 23, 2024

Simplifying the positive controls to one sample per lineage:

strain date country pango_lineage region genbank_accession
FRA/IHUCOVID-64762/2022 2022-02-09 France XD Europe OM990851.1
England/MILK-3729AD6/2022 2022-02-16 England XE Europe OW016842.1
England/MILK-327F0C5/2022 2022-01-14 England XF Europe OV738853.1
Scotland/QEUH-37E04A0/2022 2022-02-21 Scotland XG Europe OW084783.1
England/MILK-37D141B/2022 2022-02-20 England XH Europe OW042525.1
England/MILK-393A26F/2022 2022-03-04 England XJ Europe OW197337.1
England/MILK-3BFC759/2022 2022-03-23 England XL Europe OW360896.1
USA/NY-Broad-CRSP_WH5TJZ42BYV4BC3T/2022 2022-03-28 USA XM North America ON199453.1
England/MILK-3B62C6E/2022 2022-03-19 England XN Europe OW320124.1
Wales/LSPA-3A9969E/2022 2022-03-13 Wales XR Europe OW286587.1
Scotland/QEUH-38D11C8/2022 2022-03-02 Scotland XP Europe OW159779.1
USA/CO-CDC-FG-248528/2022 2022-01-19 USA XS North America OM477123.1
England/MILK-38AA91B/2022 2022-02-28 England XQ Europe OW192527.1
Germany/OW765577.1/2022 2022-03-18 Germany XAB Europe OW765577.1
USA/TX-CDC-STM-9J566SSEM/2022 2022-06-10 USA XAF North America ON836693.1
USA/CA-CDC-QDX37910441/2022 2022-06-09 USA XAN North America ON847076.1
Denmark/OX236618.1/2022 2022-07-06 Denmark XAK Europe OX236618.1
Denmark/OX214489.1/2022 2022-06-06 Denmark XAL Europe OX214489.1
USA/CA-CDC-LC0660066/2022 2022-05-22 USA XAP North America ON660081.1
USA/IL-CDC-STM-9T8P4JYCF/2022 2022-07-26 USA XAS North America OP165352.1
England/LSPA-3E384C0/2022 2022-05-29 England XAU Europe OX037941.1
England/PLYM-3EDDB04/2022 2022-07-11 England XAZ Europe OX241975.1

from ncov-recombinant.

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