Comments (11)
Hi there! It is not immediately clear what caused that error. Would it be possible to send me a subset (~10000 lines) of your VCF, and I'll see if I can diagnose the issue on my end?
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from pixy.
Hi Dan, I am not seeing your attachments, can you provide a dropbox/drive link or email them to me at [email protected]? I am guessing the problem has something to do with how haploid genotypes are represented.
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from pixy.
Hi Dan,
Just ran the sample data you sent me, and I haven't been able to reproduce the error. Can you confirm that you get the error with the sample data? If not, can you send me some data that does produce the error?
Edit: Might need the populations file also, thanks!
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from pixy.
Hi Dan,
Very mysterious! I will see if I can get the error on my Mac today. Can you possibly share your populations file?
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from pixy.
Hi Dan, is the "Transfer.PvP01_00_99.final" line in your populations file? If so, it doesn't have a population field. Can you try running without that line (or assign it to a population)?
from pixy.
from pixy.
Awesome! I'll work on adding a more informative error message to catch that in the future. Thanks for your help tracking this down.
from pixy.
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