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ksamuk avatar ksamuk commented on July 23, 2024

Hi Mathias!

You're in luck, all these features already exist in the forthcoming version of pixy! I'll reference this issue when we do the release in a week or so.

Cheers,

Kieran

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mscharmann avatar mscharmann commented on July 23, 2024

Hi Kieran,
thanks for the quick reply, I can't wait to get the new version ...!
Cheers, Mathias

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EveTC avatar EveTC commented on July 23, 2024

Hi I am also looking at a way to calculate it over the whole chromosome. How can I install the new version? I do not think it is the one available through conda? Thanks

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ksamuk avatar ksamuk commented on July 23, 2024

Hi there, the newest version of pixy on conda-forge (1.1.1.beta1) has this feature. Omitting the --interval_start and --interval_end arguments should result in calculation over whole chromosome(s). You can optionally also specify intervals manually using the --bed_file option. Let me know if you run into any issues!

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