krishnaswamylab Goto Github PK

aanet

Archetypal Analysis network (AAnet)

blis

Accompanying code for the AISTATS 2024 paper BLIS-Net: Classifying and Analyzing Signals on Graphs

catch

Learning cellular hierarchy from scRNAseq data

cell-dynamics-pipeline

condensation

Diffusion Condensation is a topologically-inspired machine learning algorithm that is used to identify populations of cells across granularities.

cshl_computationalgenomics2022

cshl_computationalgenomics2023

curvenet

Diffusion curvature and Hessian prediction using point samples from quadratic hypersurfaces

cuts

[MICCAI 2024] CUTS: A Deep Learning and Topological Framework for Multigranular Unsupervised Medical Image Segmentation

cytof-preprocessing

Package of Matlab scripts to preprocess CyTOF data

demap

Denoised Embedding Manifold Preservation

diffusionemd

Code corresponding to the paper Diffusion Earth Mover's Distance and Distribution Embeddings

directed-hierarchical-gene-networks

dymag

Graph Differential Equation Neural Network

flowartist

Flow Respecting Embeddings of Directed Graphs

fluxbrain

pytorch implementation of FluxBrain, multimodal encoder-decoder networks

fmgan

gefmap

gene-signal-pattern-analysis

Learning meaningful representations of genes

geosinkhorn

Code for the paper Geodesic Sinkhorn for Fast and Accurate Optimal Transport on Manifolds.

graph_fit

New ways of fitting a graph to vector data.

graphspectralregularization

Graph Spectral Regularization for Neural Network Interpretability

graphtools

Tools for building and manipulating graphs in Python

grassy-net

gsae

Code from 'Uncovering the Folding Landscape of RNA Secondary Structure with Deep Graph Embeddings"

gspa-manuscript-analyses

Learning meaningful representations of genes

gsth

harmonic-alignment

hca

HCA

heatgeo

Embedding with the Heat-geodesic dissimilarity