kouichi-c-nakamura Goto Github PK

allenccf

Tools to work with Allen Inst CCF data in matlab

anzan_training

ap_histology

Histology processing

atom-styles-less-for-matlab

styles.less file customization for MATLAB language

bio-formats-documentation

Bio-Formats documentation

chan_spike2

MATLAB tool to analyze neuroscience data derived from Spike2 acquisition software

copytoimageplus

Assuming you have communication between ImageJ and MATLAB via ImageJ-MATLAB, copytoImagePlus allows you to turn a MATLAB array into ImagePlus object.

correrationcoefficient

ImageJ plugin code written in JAVA for Nakamura K, Watakabe A, Hioki H, Fujiyama F, Tanaka Y, Yamamori T, Kaneko T (2007) Transiently increased colocalization of vesicular glutamate transporters 1 and 2 at single axon terminals during postnatal development of mouse neocortex: a quantitative analysis with correlation coefficient. Eur J Neurosci 26:3054–3067, http://doi.org/10.1111/j.1460-9568.2007.05868.x

csl-nature-doi

Cytation Style Language (CSL) style for Nature with DOI URL links

csl-nature-shorter

Based on Nature's numbered style but only the first author is shown and title of paper is omitted.

csl-nature-shorter-plain

CSL

csl_jns_doi

the-journal-of-neuroscience-doi.csl is CSL style definition for Zotero and other bibliographic software. The style is based on one for the Journal of Neuroscience, but with a link URL for DOI or, if DOI is not available, an URL (this can be link to PubMed entry or journal web site etc). The style is useful in written communication, such as emails.

dabest-matlab

MATLAB package to generate contrast plots

fiji

A "batteries-included" distribution of ImageJ :battery:

ijmshow

a wrapper of net.imagej.matlab.ImageJMATLABCommands.show() to support opening a MATLAB array as 5D hyperstack in ImageJ

imagej-matlab

MATLAB integration with ImageJ data structures and runtime.

imageplus2array

kilosort2

Fast spike sorting with drift correction for up to a thousand channels

kilosort2_wiki

language-spike2

Spike2 language support for Atom.

mathjax_markdown_github

omero-user-scripts

Plugins for OMERO

openmicroscopy

OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.

phase-averaged-waveform

MATLAB code for the phase-analysis of continuous data, including EEG and background unit activity (BUA)

plugin-gui

Software for processing, recording, and visualizing multichannel electrophysiology data

srtplayer

A MATLAB class that plays subtitles in *.srt format. Useful when you watch flims which lack subtitles.

translators

Zotero Translators

trialexp

wave_clus

A fast and unsupervised algorithm for spike detection and sorting using wavelets and super-paramagnetic clustering

zotero-translator-nikkei-business-online

Zotero translator for Nikkei business online