koncina Goto Github PK

bs2site

Used to build the biostat2 and rworkshop websites

cfx

Load exported csv files from the Biorad CFX manager software

darkside

Import pzfx files into R

ek.biobase

R package which includes my helper functions to handle expression sets

ek.data

R helper functions to handle my ExpressionSet and SummarizedExperiment datasets

ek.misc

Miscellaneous R helper functions used in my projects

ek.plot

Plotting helper functions

ek.survival

R helper functions to handle survival data

ek.targets

My helper functions for targets pipelines

elisar

Import ELISA OD values from tecan sunrise excel files and perform a 4PL regression

goi.tcga

Get TCGA expression values for genes of interest

iosp

IOSlides Plus

rocker-bs2

rocker image to build the biostat2 website

rocker-hpc

rotate_ellipse

Rotate an imageJ ellipse ROI and maintain it as an ellipse ROI

stack_rats

ImageJ RATS (Robust Automatic Threshold Selection) plugin improved to handle stack of images

unilur

A rmarkdown template to create tutorials/practicals or examination papers.

virtual_5d_stack

Opens multiple multichannel lsm or tif images as 5D hyperstacks (on the fly).