Comments (3)
knausb
commented on June 13, 2024
Think I've managed to reproduce behaviour locally. Using rocker/r-devel-san. I installed a bunch of dependencies manually. I had a problem with lattice. This seemed similar:
but I was not able to resolve the issue. I built with:
system('RD CMD build /RSource/vcfR')
and in order to avoid the lattice issue I used:
system('RD CMD check --no-build-vignettes vcfR_1.4.0.9000.tar.gz').
To find the error I used:
system('less -NS //vcfR.Rcheck/tests/testthat.Rout.fail')
Not sure this is the exact error reported at CRAN. Will look into this.
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knausb
commented on June 13, 2024
This appears to match the report at CRAN for clang-ASAN, gcc6-ASAN and gcc7-ASAN.
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knausb
commented on June 13, 2024
I think we got it here: 416c1d2.
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Related Issues (20)
- Variants with MAF of 0 after removing monomorphics HOT 6
- Error: ID column contains non-unique names HOT 1
- How can I add population information to genind converted using vcfR2genind? HOT 2
- RStudio Session aborted when writing VCF
- vcfR not recognizing all chromosomes HOT 2
- Heterozygous SNP calling HOT 15
- read.vcfR() coredump with empty lines in input HOT 5
- Rename Genotype information HOT 2
- vcfR2tidy can't handle files with empty INFO HOT 4
- gene/chromosome annotation HOT 2
- write.vcf() not filtering variants HOT 2
- Filtering for minor allele Frequency HOT 4
- Assign_Indiv_by_Geno.R function of Demuxafy.sif problems with the vcf HOT 1
- chromR object not finding DP and MQ values HOT 2
- read.vcfR() not recognizing missing data HOT 3
- extract.gt() missing heterozygotes HOT 1
- compilation issue HOT 2
- Hide a panel from chromoqc or plot HOT 2
- vcfR Subsetting to the first chromosome HOT 1
- change genotype(change gap to NA) HOT 2
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