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au-bootcamp-git-intro

Git introduction for Auburn University Bioinformatics Bootcamp

go_mwu

Rank-based Gene Ontology analysis of gene expression data

hey_day

marineheatwaves

marineHeatWaves is a module for python which implements the Marine Heatwave (MHW) definition of Hobday et al. (2016, Prog Ocean).

pinfish_transcriptome

This repository contains scripts used to generate the reference transcriptome for Lagodon rhomboides (the pinfish) and to analyze Tag-Seq expression data from the acute heat stress experiments published in Eaton et al. 2022.

python-argparse-demo

A simple demo of Python's argparse module.

python-debugging

Learning to use the Python debugger.

python-file-io

Learning the basics of reading and writing files in Python.

python-script-best-practice

An exercise in Python best practices.

python-tabular-data

Learning to use Python packages to work with tabular data.

python-translation-project

Learning Python by translating RNA sequences

rnaseq_workshop

This repository contains a walkthrough of how to analyze RNA-Seq data, using a sample dataset from Bernal et al. 2020 (Science Advances). This repository will be used in the RNA-Seq data analysis workshop held at UT Chattanooga from August 10-12, 2022.

tag-based_rnaseq

Cost-efficient genome-wide gene expression profiling

uaf_rnaseq_lecture

This repository contains scripts and a short walkthrough of an RNA-Seq analysis pipeline, to be used by Dr. Jessica Glass's Genomics and Bioinformatics class at the University of Alaska Fairbanks.