kkdey Goto Github PK

ancient_dna_journal_club

Ancient DNA Analysis: Journal Club

archaic

Exploration, clustering, visualization and classification of DNA damage patterns

archaic-old

An old warehouse for keeping the aRchaic codes

archaic-old-2

R package for ancient DNA damage modeling

archaic.site

Website builder for aRchaic

archaic_pages

Github pages for the package aRchaic

ash_stan

A Git repo for ash using STAN

ashnet

Network Learning using adaptive shrinkage (ash)

ashr

An R package for adaptive shrinkage

autoimmune

CountClust on autoimmune data (with Yang Li)

awesome-courses

:books: List of awesome university courses for learning Computer Science!

basic-stats

Basic stats lecture notes

benchmarking

Benchmarking experiments on FLASH and ASH

bioviz

Interactive Visualization of statistics and genomics using Javascript

black_magazines

Word2vec + Statistical analysis of Black Magazines during civil rights era

bookdown

Authoring Books with R Markdown

bookdown-demo

A minimal book example using bookdown

cancer_meta_analysis

This is a meta analysis project I am part along with Avash Das et al. It is accompanying paper to thalassemia but on ALL

cellcycler

R package for cell cycle phasing and analysis

classtpx

An R package for Semi-supervised Topic models

contrastive

Exploration with contrastive algorithms

corshrink

R package for adaptive correlation and covariance matrix shrinkage.

corshrink-pages

A webpage for the CorShrink R package

corshrink-paper

Github repo for conference paper on Correlation shrinkage

corshrink2

Workflow for follow up work on CorShrink

corshrink_workflow

Workflow to maintain the codes and analysis for the CorShrink paper

count-clustering-old

contains count clustering methods in RNA Seq

countclust

A R package for Grade of Membership model and Visualization of counts data:

countclust-1

covtpx

Covaraite adjusted Grade of Membership Model (covGoM)