Aaron A King's Projects
Miscellany
a helper package for pomp
Materials for ICTP Workshop on Mathematical Models of Climate Variability, Environmental Change and Infectious Diseases
Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE
An ongoing repository of data on coronavirus cases and deaths in the U.S.
POMP models for genetic data
Supporting material for Bjørnstad, Viboud, Grenfell, King (2020) "Comparison of alternative models of human movement and the spread of disease"
Aaron A. King
Supporting code and data for Frontiers MS "Red blood cell dynamics during malaria infection violate the assumptions of mathematical models of infection dynamics"
Supporting material for the paper "The impact of past vaccination coverage and immunity on pertussis resurgence", M. Domenech de Cellès, F. M. G. Magpantay, A. A. King, and P. Rohani, Science Translational Medicine 10(434): eaaj1748, 2018. https://doi.org/10.1126/scitranslmed.aaj1748
Some useful Mathematica add-on packages
Modelling measles spatial spread with a competing-risks framework
An R package for parallel computation using MPI
Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses
R package for statistical inference using panelPOMPs (panel Partially Observed Markov Processes)
R package for phylodynamics
R package for statistical inference using partially observed Markov processes
A Tutorial Introduction to R
Simulation-based Inference for Epidemiological Dynamics
Training Program in Quantitative Ecology
Model-based Inference in Ecology and Epidemiology
Supporting code and data for King, Lin, & Ionides (2024) "Exact Phylodynamic Likelihood via Structured Markov Genealogy Processes"
Subplex Optimization Algorithm
the Great Tao Package
Theory of Infectious Disease Seminar
Visit-day Scheduler