Name: Kilian Leon Kleemann
Type: User
Company: Bonn University & Bonn University Hospital
Bio: Passionate about impact of retroelements on neuroimmunology. Developing tools to investigate retroelement activty.
Twitter: kiliankleemann
Location: Bonn
Blog: kiliankleemann.github.io
Kilian Leon Kleemann's Projects
Config files for my GitHub profile.
Public data analysis of blood RNA seq
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Behrendt Immunosensation Lab
Conda recipes for the bioconda channel.
š¬ Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
Various scripts to analyse bulkRNAseq data, including making significant gene list, visualizations such as heatmaps and volcano-plots and making barplots for important genes. Further analysis will include pathways.
Code and data to generate figures for the manuscript "Longitudinal characterization of circulating neutrophils uncovers phenotypes associated with disease severity in hospitalized COVID-19 patients"
Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)
Single cell transcriptomics reveals cerebrospinal fluid immune dysregulation during healthy brain aging and cognitive impairment
docker application for bulk
A tool to find sequencing data and metadata from public databases.
A robot powered training repository :robot:
GTEx & TOPMed data production and analysis pipelines
HMS Research Computing User Training
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter)
Make Interactive Complex Heatmaps
Intro_to_shell
āØ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Pipeline to align nano-ore long read RNA fast
Different websites describing analysis pipelines
Template for DESeq2 Analysis of RNA-seq data
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Shiny Interactive Web Apps for Single-Cell Data
React
Typescript
Django
Laravel
Facebook
Microsoft
Google
Alibaba
D3
Tencent