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bioconda-recipes

Conda recipes for the bioconda channel.

cdil-cnn

centrifuge

Classifier for metagenomic sequences

cpython

The Python programming language

deep-protein-generation

draftgenomes

Script to collect sequence files from multiple NCBI WGS projects and process them (LEGACY SOFTWARE)

evcouplings

Evolutionary couplings from protein and RNA sequence alignments

gat-go

gr

Genome Research template for LaTeX

handson-ml2

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.

ivar

iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

jld.jl

Saving and loading julia variables while preserving native types

lucaprot

LucaProt: A novel deep learning framework that incorporates protein amino acid sequence and structure information to predict protein function.

mappgene

mappgene (Massively Parallel and Portable Genomic Sequence Analysis) runs SARS-CoV-2 sequencing on HPC platforms.

matplotlib

matplotlib: plotting with Python

optlang

optlang - sympy based mathematical programming language

pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

perm-je

PERsistent heap Management library (LLNL-CASC)

profileview.jl

Visualization of Julia profiling data

pyenv-doctor

Verify pyenv installation

pylatex

A Python library for creating LaTeX files

ratsvm

Robust Analysis of Time Series in Virome Metagenomics

rcf-aux

Recentrifuge auxiliary stuff

recentrifuge

Recentrifuge: robust comparative analysis and contamination removal for metagenomics

ribosor

The RiBoSor: creates alternative reading frames within an existing gene

typeshed

Collection of library stubs for Python, with static types