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khanhlee's Projects

bert-dna icon bert-dna

Incorporating Pre-training of Deep Bidirectional Transformers and Convolutional Neural Networks to Interpret DNA Sequences

bert-enhancer icon bert-enhancer

A Transformer Architecture Based on BERT and 2D Convolutional Neural Network to Identify DNA Enhancers from Sequence Information

chestxphoto icon chestxphoto

A novel approach to remove foreign objects from chest X-ray images

cs6ma-pred icon cs6ma-pred

Optimizing hyperparameter tuning in machine learning to improve the predictive performance of cross-species N6-methyladenosine sites

deep-clathrin icon deep-clathrin

Identification of clathrin proteins by incorporating hyperparameter optimization in deep learning and PSSM profiles

deep-gtp icon deep-gtp

Using two-dimensional convolutional neural networks for identifying GTP binding sites in Rab proteins

deep-motor icon deep-motor

Identifying molecular functions of cytoskeleton motor proteins using 2D convolutional neural network

deeppromoter icon deeppromoter

Classifying promoters using deep learning and fastText features

deployenhancermodel icon deployenhancermodel

Deploy a recurrent neural network model ensemble to perform enhancer identification

ednn-eg icon ednn-eg

A computational framework based on ensemble deep neural networks for essential genes identification

et-gru icon et-gru

ET-GRU: multi-layer gated recurrent units and position specific scoring matrices to identify electron transport proteins

fastsnare icon fastsnare

Identifying SNAREs by incorporating deep learning architecture and amino acid embedding representation

fastspot icon fastspot

A sequence-based approach for identifying recombination spots in Saccharomyces cerevisiae by using hyper-parameter optimization in FastText and support vector machine

fastsulf-dnn icon fastsulf-dnn

Using deep neural networks and biological sub-words to detect protein S-sulfenylation sites

fertility-gru icon fertility-gru

Identifying fertility-related proteins by incorporating GRU and PSSM profiles

klf-xgb icon klf-xgb

A sequence-based prediction of Kruppel-like factors proteins using XGBoost and optimized features

lysinesgt icon lysinesgt

Incorporating Convolutional Neural Networks and Sequence Graph Transform for Identifying Multilabel Protein Lysine PTM Sites

nad-fad- icon nad-fad-

Prediction of NAD/FAD by incorporating deep neural networks

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