keyong-bio Goto Github PK

afr-gwas-neutrophil

bnmf-clustering

book

brain-wide-mr-anx

centrarium

A simple yet classy theme for your Jekyll website or blog.

cibookex-r

Causal Inference: What If. R and Stata code for Exercises

consensusclustering

Shiny application implementing Consensus Clustering for various clustering algorithms.

consensusclustering-1

R package for consensus clustering

crassphage_project

Source code for the crAssphage project

dataexplorer

Automate Data Exploration and Treatment

epi-kdeng

epi-omics-meeting-2023

This repository will update the context discussed in EPI-OMICs-Meeting coordinated by the Department of Clinical Epidemiology, LUMC

epigraphdb-pqtl

This is the github repository to provide the R scripts been used in the phenome-wide Mendelian randomization study of plasma proteome.

eqtplot

Visualization of Colocalization Between eQTL and GWAS Data

evidenceaggregateddriverranking

Ranking methodology of potential Driver genes using multi-view feature sets

forestplot

Advanced forest plots in R using grid graphics

geo

gwastoolkit

A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.

intro-to-r-with-dge

ipvs

identification of principal variables in a data set of intercorrelated features

keyong-bio

Config files for my GitHub profile.

keyong-bio.github.io

My blog

keyongbio

labs

Rmd source files for the HarvardX series PH525x

lncrna_mrna_neighboring_analysis

m6a-seq_analysis_workflow

A pipeline to process m6A-seq data and down stream analysis.

mendelian-randomization-breast-cancer

Analysis workflow for MRC-IEU PhD mini-project on childhood BMI effect on breast cancer

metabolomicsgwas_interval_epicnorfolk

This repository contains scripts related to Surendran P, Stewart I et al. Nature Medicine 2022 "Rare and common genetic causes of chemical individuality and their effects on human health"

metabotype_nmr

This is the repository (code) for the paper titled: "Identification of metabotypes through fasting and postprandial metabolomics: charting a path for personalized nutritional strategies "

mr-phewas

Code for MR-PheWAS paper