Kevin Joseph's Projects
A Shiny web app for mapping datasets using Seurat v4
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
calciumImagingAnalysis: a software package for calcium imaging analysis of one- and two-photon imaging datasets.
Accurate and fast cell marker gene identification with COSG
A Toolkit for Construct Tree-shaped Trajectory for Flow and Mass Cytometry data
Deep count autoencoder for denoising scRNA-seq data
Deep Learning Models for Calcium Imaging Data
DeepCAD-RT: Real-time denoising of fluorescence time-lapse imaging using deep self-supervised learning
Transcriptome Analysis for Chronic Flexible Probe implantation in the rodent cortex
An R package for the processing of plate reader and flow cytometry data. This includes: normalisation and calibration of plate reader data, and removing debris and doublets and calibration of flow cytometry data.
Hardware Accelerated Read Until
Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.
A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.
Config files for my GitHub profile.
Webpage for the Laboratory of NeuroEngineering, Neurosurgery Freiburg
Allow to control stage and manipulators.
Platform for Calcium Imaging analysis
NETwork CALcium analysis
R tutorials from scratch
Keras network for spike detection from calcium traces