kevinj24fr Goto Github PK

azimuth

A Shiny web app for mapping datasets using Seurat v4

caiman

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

calciumimaginganalysis

calciumImagingAnalysis: a software package for calcium imaging analysis of one- and two-photon imaging datasets.

celltrek

cosgr

Accurate and fast cell marker gene identification with COSG

cytotree

A Toolkit for Construct Tree-shaped Trajectory for Flow and Mass Cytometry data

dca

Deep count autoencoder for denoising scRNA-seq data

deep-calcium

Deep Learning Models for Calcium Imaging Data

deepcad-rt

DeepCAD-RT: Real-time denoising of fluorescence time-lapse imaging using deep self-supervised learning

deepinterpolation

flexprobe-chronic

Transcriptome Analysis for Chronic Flexible Probe implantation in the rodent cortex

flopr

An R package for the processing of plate reader and flow cytometry data. This includes: normalisation and calibration of plate reader data, and removing debris and doublets and calibration of flow cytometry data.

haru

Hardware Accelerated Read Until

inferring-and-visualizing-rna-velocity-in-bulk-rna-seq

Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.

jetson_nanopore_sequencing

A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.

kevinj24fr

Config files for my GitHub profile.

lab-website

Webpage for the Laboratory of NeuroEngineering, Neurosurgery Freiburg

manipulatorcontrol

Allow to control stage and manipulators.

mesmerize

Platform for Calcium Imaging analysis

netcal

NETwork CALcium analysis

r_for_beginners

R tutorials from scratch

spikefinder-elephant

Keras network for spike detection from calcium traces

stellar