kerrycobb Goto Github PK

3rad-demultiplex-nextflow-pipeline

Demultiplex 3RAD data.

align-error-sp-tree-sim

Scripts and manuscript for species tree book chapter on bias and error

ancestry-block-sim

Tool to simulate recombination of different ancestries

archiving-seq-data

awesome-cv

:page_facing_up: Awesome CV is LaTeX template for your outstanding job application

bayes-demo

A demonstration of Bayesian statistics

beta-binomial-web-demo

A demo of bayesian statistics

bgc_utils

Python module for parsing the output of the software tool bgc (bayesian genomic clines)

bioseq

Nim package for working with biological sequence data such as DNA, RNA, and amino acids.

centroid-lookup

Lookup centroids for Global Administrative Areas boundaries

cnn-utils

Utility functions for doing convolutional neural network analysis

concat-samples-fa

Generate concatenated consensus sequence for each individual from Stacks populations fasta_samples output. Effectively generating the phylip_var_all output.

cv

daydif

Tool for computing the number of days between two calendar dates

dissertation

frog_calls

Auburn University herpetology lab study tool for frog calls. To use visit: https://tinyurl.com/aufrogs or https://kerrycobb.github.io/frog_calls/

frogcap-sequence-capture

Probe set files and pipeline for the analysis of data acquired from the Hutter et al. (2019) sequence capture probe set for all frogs

getting-started

Getting started with Nim for Scientific Computing

gps-utils

Command line tools for accessing and visualizing data from a Garmin GPS device

herp-lab-proj-sim

Script to simulate data for Auburn University herpetology class project

lib-prep-tools

Some command line tools to aid in preparing genomic libraries.

memorize.js

A flexible teaching and studying tool built with reveal.js

nim-bayes

Tutorial on Bayesian inference of a linear model in Nim

nim-nexus-lib

Half baked library for reading and writing Nexus files

nimibook

A port of mdbook to nim(ib)

packages

List of packages for Nimble

phy2nex

Convert phylip file to nexus with option to include partition file

phyletica.github.io

phyletica.github.io

phylogeni

A Nim library for phylogenetic trees

plotting-tutorial

Introduction to popular visualization tools for data science