kellijohnson-noaa Goto Github PK

.github

Files for all repositories within kellijohnson-NOAA

adnuts

An R package for NUTS sampling using ADMB

alaska

Stock delineation for Pacific cod in the Aleutian Islands and the Gulf of Alaska using population growth rates.

ar-perf-testing

Investing autocorrelated recruitment deviations in Stock Synthesis

asar

DRAFT. Automated Stock Assessment Reporting

brailler

An add-on package for R primarily aimed at improving access to R for blind users. The package contains tools and functions that will help get a student through their first year statistics course, and probably well beyond it.

configuration

Scripts to configure various software

deploy-bookdown

Example of how to automatically deploy a bookdown-generated static site using GitHub actions.

dharma

Diagnostics for HierArchical Regession Models

dirichlet-multinomial

Testing Dirichlet-Multinomial option in SS V3.3

fims-userscenarios

Documentation of user scenarios to help the design, development, and ease of use of FIMS.

git-references

Referenece material pushed to git

iwccla

International Whaling Commission Catch Limit Algorithm

kellijohnson-noaa.github.io

Website for Kelli Johnson's NOAA github account

laplace

Laplace approximation for stock synthesis (SS), a statistical-catch-at-age stock assessment software package.

maturity_spline

Spline fitting for maturity data

msamak

Multispecies stock assessment method for alaska

nmfsreports

Write smart R Markdown reports with these basic and easy funcitons!

noaa-notebook

Collection of notes about science, R, LaTeX, etc. while working for NWFSC.

r4kfj

R functions for Kelli Faye Johnson

recdevanomaly

Stock assessment methods in the face of anomalous recruitment events

regional-sa-workflows

Summary of regional stock assessment workflows and tools used across the U.S. Fishery Science Centers. Updated as of April 2024

roxygen2

Generate R package documentation from inline R comments

saconvert

Convert stock assessment model input files.

sahyperpars

Investigating best practices for estimating hyper parameters in stock assessments

sandbox

A test bed for trying things out.

sdmtmb

:earth_americas: An R package for spatial and spatiotemporal GLMMs with TMB

ss3om

surveyextents

Develop map views of NOAA CCLME trawl survey extents

tsrelation

R code for estimating relationships between time-series data