Comments (1)
Hi assane-mbodj, the duplicates are discovered together i.e. across input samples. The vcf records are clustered on a graph, so each connected-component in the graph is considered to represent the same underlying SV. All records for the component are merged into a single row in the final output
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Related Issues (20)
- Generating Alternative Reference HOT 16
- Run OSError: [Errno 24] Too many open files Mac OS M HOT 4
- OverflowError: can't convert negative value to size_t HOT 2
- Dysgu filter IndexError: string index out of range HOT 6
- long reads default mapq lowered to 1: help text for dysgu call still says pacbio and nanopore mode has --mq 20 HOT 1
- When will docker image with new release be available? HOT 1
- Got an warning when Loading Model in "dysgu run" HOT 1
- problems genotyping, dysgu run --sites HOT 3
- clarification needed on RG and samples HOT 4
- Getting SV length in dysgu output vcf HOT 3
- _pickle.UnpicklingError: invalid load key, 'A'. Failed to read from standard input: unknown file type HOT 2
- Subject: Inquiry on Benchmarking DEL and INS Events with dysgu Pipelines. HOT 35
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- When combining a large number of samples, the speed is very slow HOT 13
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- Long run time HOT 13
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- Process_KILLED HOT 7
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