katnastou Goto Github PK

amyco

The Amyloidoses Collection

annodoc-physical-protein-interaction-corpus

Annotation documentation for physical protein interaction relation extraction corpus

antisoma

The ANTISOMA computational pipeline

bert-span-classifier

Text span classifier using BERT

biobert-based-entity-type-classifier

multiclass classifier for blocklisting

coneco

A Corpus for Named Entity Recognition and Normalization of Protein Complexes

coneco-transformer-ner

CoNECo NER training for transformer models

coneco-transformer-tagger

CoNECo Transformer based tagging for documents

deep_nlp_chatbot

The deep NLP chatbot implemented in the online class for Deep Learning and NLP

deeplearningexamples

Deep Learning Examples

demo

Demo repo for tutotial articles on Opensource.com

finbert

BERT model trained from scratch on Finnish

github-demo

A simple demo repository to show the basic FGIt workflow

hello-world

Just another repository

js-algorithms

Several algorithm implementations in JS + node.js Authentication

lifestylefactors-relation-annotation-docs

Annotation documentation for relationships

linnaeus-corpus

Work related to the LINNAEUS corpus

machinelearning_exercises

The code from Machine Learning Class in Udemy

mbppred

Code for the method described here 10.1016/j.bbapap.2016.03.015

permemdb_webpage

The webpage of PerMemDB

python

Several useful python scripts

recipes

Workshop repo

regulatome-annodoc

The annotation documentation for relationship annotation for the RegulaTome corpus

s1000-corpus-annotation-guidelines

Annotation guidelines for S1000

s800

Tools for working with the S800 corpus

s800-revision-data

Data for revision of S800 corpus (https://species.jensenlab.org/)

string-db-tools

Tools for working with STRING database text mining data

stringdb-typed-relation-annotation-docs

various-scripts-for-s1000

A repository to store code that is necessary for producing results for the S1000 paper

vgics

The code used in the analysis described here 10.1021/acs.jproteome.9b00121