kannandeepti Goto Github PK
Type: User
kannandeepti's Projects
active-polymers
Brownian dynamics simulations of a Rouse polymer driven by correlated active forces
chromatin_tracing_analysis
Adapting source codes and example scripts from chromatin tracing projects of the Zhuang lab
deepti_utils
A general package with utility functions useful for development and scientific analysis in Python
dotfiles
deepti's dotfiles
hic-rnapii-degron
Analysis of HiC data sets featuring transcription inhibition upon exit from mitosis
ktn
Code to represent and analyze kinetic transition networks
pf_stability_analysis
Simulating phase field models of phase separation + reactions
polychrom
Polymer simulations of chromosomes and generating "in silico" Hi-C maps
polychrom_analysis
Custom Brownian dynamics integrators and scripts to analyze the output of polychrom simulations
pygt
Graph transformation for metastable Markov chains
repeat-aggregation
Code to accompany Kimchi et al. 2022
wlcsim
Andy's WLC code with brownian dinamics
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