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landlab

Landlab codebase, wiki, and tests

lem-wle

A landscape evolution model that incorporates lateral erosion

marine-modelling-in-python

Marine Modelling in Python - A NIOZ Course

microevo

Comprehending the assembly and maintenance of microbial diversity in natural communities is a major problem of interest in biology. Here, we present a model of species in a continuous space, with mutual higher order interactions, to examine the assembly and stability of microbial communities.

modeling-snow-crystal-growth

Python Project L1S2 on snow-crystal growth

noc-examples-processing

Repository for example code from The Nature of Code book

numba

NumPy aware dynamic Python compiler using LLVM

numba-examples

Example Numba implementations of functions

numbacupymodel

Model of CUDA Python

numbapro-examples

Examples of NumbaPro in use.

parkerebook_bmi

BMIed scripts from Gary Parker's E-book on River Morphodynamics (Python version)

pattern_generation

Third year dissertation project

phase-separation-patterned-ground

This repository provides the OpenCL and Matlab codes that simulate the phase separation model 1 and model 2 on our manuscript. "Ice needles weave patterns of stones in freezing landscapes" by Anyuan Li, Norikazu Matsuoka, Fujun Niu, Jing Chen, Zhenpeng Ge, Wensi Hu, Desheng Li, Bernard Hallet, Johan van de Koppel, Nigel Goldenfeld, and Quan-Xing Liu (2021), PNAS.

phd

PhD Dissertation: Analysis of Surface Cracks in Plates Loaded in Bending under Elastic-Plastic and Fully-Plastic Conditions

pollenphasetransitionpaper

python-machine-learning-book

The "Python Machine Learning (1st edition)" book code repository and info resource

quantifying_zebrafish_patterns

Code for quantifying spots and stripes using topological data analysis and machine learning

quantitative-inferring-three-mechanisms-from-the-spatiotemporal-patterns

ready

A cross-platform implementation of various reaction-diffusion systems.

scientific-python-lectures

Lectures on scientific computing with python, as IPython notebooks.

self-organized-crack-patterns

This repository provides the data and R codes that simulate the self-organized crack patterns on our manuscript. "Biophysical self-organization amplifies the resilience of salt marshes" by Kang Zhang, Jiaguo Yan, Qiang He, Chi Xu, Johan van de Koppel, Baoshan Cui, and Quan-Xing Liu.

shedskin

Shed Skin is a Python to C++ compiler. Read the introduction below to learn about the restrictions.

size-and-shape-of-insect-wings

Code accompanying "Size and shape of insect wings" by M. Salcedo, J. Hoffmann, S. Donoughe, and L. Mahadevan.

supercomputing2016-python

Materials for the Supercomputing 2016 tutorial on high performance Python

surface-growth

This repository contains two codes to simulate Ballistic Deposition and Random Deposition

surface-growth-models

Graphical simulation of surface growth models

surfacegrowth

Simulations about various surface growth models

the-algorithmic-beauty-of-sea-shells

the-nature-of-code-course

Syllabus and Course Materials for The Nature of Code. Book code examples are here: https://github.com/shiffman/The-Nature-of-Code-Examples

thinfilmdepositions

Contains codes for Monte Carlo simulations of thin film growth, simulating a stochastic PDE related to surface growth, and some associated files for measuring surface statistics