kamalicmr Goto Github PK
Name: DR B KAMAL HASAN
Type: User
Bio: Hello, I am Dr Kamal Hasan, from ICMR NIV, passionate about Clinical Infectious, Heamoglobinopathies and Rare Diseases Genomics
Location: Pune, India
DR B KAMAL HASAN's Projects
clair3-germline-small-variant-caller-long-readsr
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
de_analysis
Scripts to run differential expression analysis using DESeq2 package
epi2me-api
API for communicating with the EPI2ME Platform for nanopore data analysis. Used by EPI2ME Agent & CLI.
epi2me-labs.github.io
filtlong
quality filtering tool for long reads
genepi
Computational Protocol for Assembly and Analysis of SARS-nCoV-2 Genomes
hacker_rank
Find solutions to hackerrank challenges
interartic
InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..
minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
nanoseq-demultiplex-qc-and-alignment-pipeline
Nanopore demultiplexing, QC and alignment pipeline
nextflow-website
Code and files for the main nf-core website.
polypolish
a short-read polishing tool for long-read assemblies
porechop
adapter trimmer for Oxford Nanopore reads
qiime2
Official repository for the QIIME 2 framework.
r-scripts
Miscellaneous R script to wrangle data and generate visualizations
rna-seq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
tidyverse-2023
youtubetutorials
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