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baseline

CAFA baseline methods

beem

Conversion of PDBx/mmCIF files to best effort/minimal PDB files

blastknn_benchmark

blastknn_benchmark_cafa3

cafabeyond

Evaluating the feasibility of extending CAFA to larger dataset

ce

Combinatorial Extension (CE)

cofactor_evalulate

scripts to evalulate COFACTOR GO prediction accuracy

cofactor_library

scripts to update template library for COFACTOR

contactlib

Tool for searching proteins through structural fingerprints.

deepcontact

forked from https://github.com/largelymfs/deepcontact

docker-lamp-cgi

A simple LAMP image using Ubuntu, Apache, PHP and MySql in a single image with CGI support

dssp

The DSSP building software

furna

generate_bnumber_mapping

Generate Mapping File between UniProt Accession, Gene Name, and b-number

gofdr

hhsuite2

A fork for the old hhsuite-2.0.16

homodimerdb

minimolprobity

mmcif2biolip

BioLiP2 database curation and web interface

mrtmodseq

Modification profiling with Marathon RT

msaparser

utilties for parsing FASTA and PSICOV format multiple sequence alignment

ncbi-blast-legacy

legacy blast

obo2csv

pconsc4

Fast and easy contact prediction.

pdb2fasta

implementing PDB to FASTA file format conversion in multiple languages

pdbparser

c++ programs for parsing PDB files

pdc

Protein data compressor

peptidebuilder

ppi2go

GO prediction by STRING protein-protein interaction

psiblast_baseline_cafa

GOfreq: GO prediction by BLAST and PSIBLAST sequence search