Comments (2)
This might be a dependency issue. Mine is good. I feel there is some updates in pandas causing this issue, but I agree the report function is written in quite a messy way. I will need to install the latest pandas and debug more.
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I also met a similar issue when generating report, seems the numpy calculations returns an object which object is not compatible with DataFrame object in pandas library:
Traceback (most recent call last): File "/home/alan/simglucose/sim_origin.py", line 6, in <module> simulate(start_time=datetime.combine(datetime.now().date(), datetime.min.time()),controller=BBController(),cgm_seed=123412,animate=False,parallel=True) File "/home/alan/simglucose/simglucose/simulation/user_interface.py", line 383, in simulate results, ri_per_hour, zone_stats, figs, axes = report(df, save_path) File "/home/alan/simglucose/simglucose/analysis/report.py", line 251, in report ri_per_hour, ri_mean, fig_ri, ax5 = risk_index_trace(BG, visualize=False) File "/home/alan/simglucose/simglucose/analysis/report.py", line 102, in risk_index_trace fBG_df = pd.concat(fBG, axis=1).transpose() File "/home/alan/.local/lib/python3.10/site-packages/pandas/core/reshape/concat.py", line 372, in concat op = _Concatenator( File "/home/alan/.local/lib/python3.10/site-packages/pandas/core/reshape/concat.py", line 462, in __init__ raise TypeError(msg) TypeError: cannot concatenate object of type '<class 'numpy.float64'>'; only Series and DataFrame objs are valid
My dependencies are:
pandas: 2.0.2
numpy: 1.24.3
Python: 3.10.6
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Related Issues (20)
- The reward function encourages short episodes HOT 2
- Units in the Meal Absoption Model HOT 6
- Controller is not reset during simulation of patients HOT 5
- Scenario with no meal in gym env HOT 2
- How to correctly implement the use of OpenAI Gym - reset() and step() methods are not implemented (NotImplementedError on google Colab)
- Dbar Modification HOT 3
- whether there is paper related to this project or not?
- Input meal size given in (g/min) instead of expected (g)
- Import Error
- Risk index calculation error in report generation
- Risk Index probably incorrect HOT 3
- Does this simulator has the property of time-delay? HOT 1
- Insulin unit error and scenario setting error HOT 3
- pip 0.2.8 broken HOT 2
- Patient interface missing observation, state and t HOT 2
- Clarity on calculation of parameters apha and beta HOT 2
- Patient Parameter Documentation
- Sensor sample_time affects reported CHO and Insulin
- Deprecated distutils in Python v3.12 causes "no module..." exception
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