jvivian Goto Github PK

10k_exome_project

actionable-subtypes-manuscript

Notebook, data, and methods repository

adam

A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

advent-of-code

Advent of Code challenges

advent-of-code-2018

2018 Advent of Code challenges done in Rust

aristeia-calculator

Calculate probability distributions for the game Aristeia

arrow-dplyr

A quick lightning talk on using arrow and dplyr together

averse

Averse is a recipe store and meal planner written in Rust as an exercise

bayesian-outlier-model

Identify gene outliers from RNA-seq expression

bd2k-summer-workshop

Teaching the fundamentals of bioinformatics and data science. BD2K Summer Workshop 2016

bibtex-html-citer

Finds LatTeX citations in HTML documents and replaces with links.

blog

Repository for posts / code that don't need their own repo

bme-230b

Class lectures for BME-230B

cancer-driver-pathway-expression

Identify relationships between cancer drivers

cgl-docker-lib

children-of-skynet

Lazy kids abusing machines

common-workflow-language

Repository for CWL Specfications

coursera-machine-learning_ng

Ipython Notebooks detailing homework and notes from Andrew Ng's Machine Learning Course

crossword

Crossword generator engine in Python

deeptcga

deep learning of TCGA data

docker-containers

Dockerfiles and assets for building Docker containers

docker_tools

Collection of docker tools

dotfiles

My dotfiles synced form localhost and remote machines

ec2-metrics

Collects metrics from running EC2 instances. Can shut down workers when they go idle

fastbook

The fastai book, published as Jupyter Notebooks

fastq_pair

FASTQ pairing algorithms written in Rust

flask

A microframework based on Werkzeug, Jinja2 and good intentions

gene-outlier-detection

A Bayesian model for identifying gene expression outliers for individual single samples (N-of-1) when compared to a cohort of background datasets.

gpt-from-scratch

Repository for learning about Attention/Transformer architecture by building one from scratch

hdp_mixture

Hierarchical Dirichlet process mixture model