jvineis Goto Github PK
Name: Joseph Henry Vineis
Type: User
Company: Princeton University
Twitter: JoeVineis
Name: Joseph Henry Vineis
Type: User
Company: Princeton University
Twitter: JoeVineis
An analysis and visualization platform for 'omics data
Reinventing the wheel of DADA2 analysis yet again
Analysis of Metagenomic Data from four salt marsh sediment samples.
Analysis of short metagenomic sequencing reads for carbohydrate utilization
Tutorial to analyze COI DNA sequences of fish tissue collected from commercial and restaurant sources
Steps to create a fasta file of functional genes from 6000 ncbi "Gold" genomes and 8000 genomes derived from https://www.nature.com/articles/s41564-017-0012-7.
The scripts and notes regarding 18S amplicon sequencing analysis from TARA oceans and elsewhere
A tutorial detailing how to download fasta files for a collection of genomes
A tutorial describing how to download data from a metagenomic project from jgi
A tutorial that details how to download a list of genomes contained in the ncbi database
Haplotype Based Conversion Finder for working with Adineta vaga genome and transcriptome
A lab book for analysis of jgi single cell genomics
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
Steps to calculate relative abundance of MAGs derived from separate assemblies across samples
The baby scripts and steps used to filter reads, assign taxonomy, analyze phylogeny, and visualize: nrfA, nirS, dsrB
A collection of information for how to use MED and anvio with fun examples and some discussion. Both the Anvio and MED have their own tutorial pages which are far more in depth and informative but this page contains information relevant to a workshop hosted at Northeastern University Marine Resource Center.
The steps and scripts that I used to analyze the MOSS Landing metagenomic data including both prokaryotic and eukaryotic lineages -- functions abundance and beyond
Sick of struggling with the MG-RAST website and can't get the API to do what you are asking. Here is a step by step process to pull the data that you want from MG-RAST
scripts for dealing with sequence data primarily from illumina sequencing platforms
The steps taken to analyze the short reads generated by JGI for the PIE LTER fertilization experiment.
The steps required to repeat bioinformatic analysis used in the manuscript "Microbial dark carbon fixation fueled by nitrate enrichment"
Microbiome network analysis
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.