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adventofcode

Python code for the AdventOfCode challenges

asg

Analyse Statistique des données Génomiques

bbsg_stat2

Cours "Analyse statistique des données biologiques", optionnel en M1 BBSG AMU

bh2018paris

BioHackathon event website

bioconda-recipes

Conda recipes for the bioconda channel.

biohackathon

Repository with information about the BioHackathon hosted in Paris in Nov 2018

bioinformatics_course

Support (slides, practicals) for bioinformatics courses by Jacques van Helden

cisreg_course

Course on the analysis of cis-regulatory elements from genomic sequences

cmb-comp-bio

Computational Biology course of the Master in Computational and Mathematical Biology

greekc

Shared code for the GREEKC training hackathon on interoperability between gene regulation databases/tools

huanan_market_samples_jvh

Analysis of SARS-CoV-2 read counts versus metagenomic content for Huanan Seafood market sequencing data from Chinese CDC. Analysis built on top of Jesse Bloom's results.

lcg_beii

Support for the course "Bioinformatica & Estadistica II", 2nd year Licenciatura en Ciencias Genomicas, UNAM, Cuernavaca.

make_tutorial

motif_databases

Databases of transcription factor binding motifs for the software suite Regulatory Sequence Analysis Tools (RSAT)

neat_ghosts

files that used to be in the RSAT repository, but were only used by NeAT, which is not functional anymore

ng-cistrans-reg

rna-seq_replicate_analysis

Analysis of the RNA-seq transcriptome data with 48 biological replicates x 7 technical replicates produced by Geoff Barton's lab.

rnaseqmva_old

Evaluation of multivariate analysis methods for the supervised classification of RNA-seq data

rsat_docker

Scripts for creating a Docker container with RSAT

sars-cov-2_origins

Analysis of insertions in the genomes and proteins of coronaviruses. Illustration: AvH. (2020). Covid-19 cracked <http://doi.org/10.5281/zenodo.3734643>

shnc-opsines

Cours Nature & Culture 3 de la licence Sciences et Humanités d'Aix-Marseille Université

shnc-origines-sars-cov-2

Cours Nature et Culture de la licence Sciences et Humanités, Aix-Marseille Université

snakemake-rsat

some, tentative snakemake workflows developer by Bruno Contreras, Jaime Castro-Mondragon, Claire Rioualen and Jacques van Helden in 2016, not maintained since then.

stat1

Probabilités et statistiques pour la biologie - STAT1 - cours AMU SBBAU16L

statistics-for-bioinformatics

Theory, methods and practicals for the statistical analysis of biological data.

statistics_for_bioinformatics

Packages under development, which are used as support to the course "Statistics for bioinformatics" and the accompanying book.

stats4bioinfo

stats_avec_rstudio_eba

Cours “Statistiques avec R" pour l'Ecole de Bioinformatique Aviesan

touret_sars-cov-2_inhibitors

Statistical analysis of Touret's in vitro screening for molecules inhibiting SARS-CoV-2 infection. Illustration: AvH. (2020). Covid-19 cracked (http://doi.org/10.5281/zenodo.3734643).

using_ifb_nncr

Tutorials for the use of IFB NNCR