junjuanzheng Goto Github PK

2020-august-advanced-scrnaseq

Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory analysis. Instruction in introductory analysis will not be provided.

analysis-of-lncrna-and-cnv

analysis-tutorials

bioinformatic analysis tutorials and pipelines

awesome-r

A curated list of awesome R packages, frameworks and software.

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

basicbioinformaticsanalysisfromzhongshan

Launch Usual Clinical tool for Kind Yield

bulk_rna-seq_workflow_snakemake

STAR, cufflinks, cluster, DESeq2, GO analysis

cellreportsmanuscript

This repository contains scripts associated with the Cell Reports manuscript.

chipster-tools

Chipster analysis tool scripts

cite-seq-tcr_paper

cluster_pooled_10x_ms

Analysis of 10x single cell RNA-Seq data (pooled samples) on cluster

covid-19-rna-seq-datasets

A repository for sharing information on available COVID-19 RNA-Seq datasets

data

Data shared by Martin-Villalba-lab at DKFZ, Heidelberg, Germany

djvdj

An R package to analyze AVID-seq data

excelerate-scrnaseq

Single RNA-seq data analysis with R (Finland, May, 2019)

fastmm

FastMM: an ultra-efficient toolbox for constraint-based metabolic modeling

geneteflow

hosts

:statue_of_liberty:最新可用的google hosts文件。镜像：

immunologic_changes_with_chemotherapy_intnbc

Code used for figure generation for "Changes in peripheral and local tumor immunity after neoadjuvant chemotherapy reshape clinical outcomes"

infercc

Lung cancer 10X analysis

kdd20-tutorial

Tutorial on Automated Machine Learning at KDD 2020

lee_et_al_2020_nature

Repository for scripts used for analysis in Lee at al. 2020 "Hair-bearing human skin generated entirely from pluripotent stem cells."

metaworkflow

Online workflow guidelines for metabolomics

movics

Multi-Omics integration and VIsualization in Cancer Subtyping

music

Multi-subject Single Cell Deconvolution

pancan_nomogram_immuneprofile

TCGA pancancer nomogram and immune profile

paperwork-scrna-gse111527-mousesvz

Reanalyze of GSE111527 scRNA-seq data

pathcnn

Interpretable convolutional neural networks on multi-omics data predict long-term survival in glioblastoma

pcnetwork

r

my R codes depository