julianzaugg Goto Github PK

autodock_scripts

aviary

A snakemake pipeline for binning metagenomic assemblies

b04sm5_genome_completion

Completing and closing the genome of Streptococcus mutans strain B04Sm5 using composite long and short-read sequencing.

bayesian_network_python

Create and parameterise bayesian networks

bioinformatics_scripts

Random collection of scripts used for bioinformatics analyses. May or may not function. Most written by me.

ccfind

ccfind - circular complete genome finder with clues of terminal redundancy

cfphage_pipe

compare_compounds

example_qiime2

Example (somewhat hacky) script for running qiime2 on ACE's servers for amplicon data

fix_ncbi_mag_submission

Fix automated errors during the submission of MAGs to NCBI due to adaptors by removing problematic regions

get_neighbours

grad_align_and_measure

julianzaugg.github.io

katuali

Analysis pipelines from Oxford Nanopore Technologies' Research Division

map

Microbiome analysis package (MAP)

md_scripts

met

GIH MET pipeline

metagenomics-index-correction

mine_waste

om_respiratory_tract_16s_2021

Analysis scripts and data for "The upper respiratory tract microbiome of Australian Aboriginal and Torres Strait Islander children in ear and nose health and disease; a prospective cohort study"

otitis_project

pairdistances

pairwiseadonis

Pairwise multilevel comparison using adonis

pdprocessing

Package to handle processing of results file from PairDistances java package

phagepipe

pigc

The construction of reference gene catalog and metagenome-assembled genomes of pig gut microbiome.

pwm-sequence-ranker

sequence_transition_scorer

Score transitions between protein sequences using custom amino acid scale

skin_microbiome_16s

skin_microbiome_scc_otr_rrna_2021

Analysis scripts for "Changes in the skin microbiome associated with squamous cell carcinoma in transplant recipients"