Julien Tremblay's Projects
This is a code repository hosting code for bioinformatics training purposes.
Core BioPerl 1.x code
Public web hosting
Bioinformatics pipelines for microbial ecology
Bioinformatics tools for microbial ecology
Machine learning for microbiome data
Python utility to generate distance matrices, perform PCoAs and generate taxonomic summaries using simple tab-separated feature tables.
Figure generation R package oriented for microbiome data
A command line version of the psRNATarget workflow that predicts potential miRNA target locations on a genome.
D3.js project to view bioinformatics pipelines with force graphs.
This repo hosts scripts related to RDP training set generation and formatting
This repository contains the code for ShotgunMG, a Nextflow bioinformatic pipeline for high-resolution metagenomics
Resources related to the shotgunmg paper
Utilities to organize and query results from the ShotgunMG pipeline.
Single cell bioinformatics pipeline
Files for my custom vi environment