Comments (6)
egoberville
commented on August 18, 2024
1
Dear Jemma,
After a full update (my R version and all packages), I can now run your example perfectly, with a very nice output.... so now let's go for the next step, i.e. reproducing the code for my own dataset...! Thank you very much for your help and this nice contribution, will be very helpful to interpolate (in a right way) my data !
Best,
Eric
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jsta
commented on August 18, 2024
Hi Eric - My guess is it's a software version issue. Can you paste the output of devtools::session_info()? It would also help to know exactly what code is causing that error, is it costrasterGen?
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egoberville
commented on August 18, 2024
Dear Jemma,
Thank you very much for your prompt reply. My issue is related to the line that corresponds to the application of the ipdw function:
final.ipdw <- ipdw(training, costras, range = mean.neighdist * 10, paramlist, overlapped = TRUE)
I am sure I am doing something wrong, but I cannot find where is the issue...
Thank you very much for your time,
Eric
Please find the output from my current R session
setting value
version R version 4.2.1 (2022-06-23 ucrt)
os Windows 10 x64 (build 19045)
system x86_64, mingw32
ui RStudio
language (EN)
collate French_France.utf8
ctype French_France.utf8
tz Europe/Paris
date 2023-03-09
rstudio 2022.12.0+353 Elsbeth Geranium (desktop)
pandoc NA
─ Packages ────────────────────────────────────────────────────────────────────
package * version date (UTC) lib source
abind 1.4-5 2016-07-21 [1] CRAN (R 4.2.0)
assertthat 0.2.1 2019-03-21 [1] CRAN (R 4.2.1)
cachem 1.0.6 2021-08-19 [1] CRAN (R 4.2.1)
callr 3.7.3 2022-11-02 [1] CRAN (R 4.2.2)
class 7.3-20 2022-01-16 [2] CRAN (R 4.2.1)
classInt 0.4-8 2022-09-29 [1] CRAN (R 4.2.1)
cli 3.4.1 2022-09-23 [1] CRAN (R 4.2.1)
codetools 0.2-18 2020-11-04 [2] CRAN (R 4.2.1)
crayon 1.5.2 2022-09-29 [1] CRAN (R 4.2.2)
DBI 1.1.3 2022-06-18 [1] CRAN (R 4.2.1)
deldir 1.0-6 2021-10-23 [1] CRAN (R 4.2.0)
devtools 2.4.5 2022-10-11 [1] CRAN (R 4.2.2)
digest 0.6.30 2022-10-18 [1] CRAN (R 4.2.2)
dplyr 1.0.10 2022-09-01 [1] CRAN (R 4.2.1)
e1071 1.7-12 2022-10-24 [1] CRAN (R 4.2.2)
ellipsis 0.3.2 2021-04-29 [1] CRAN (R 4.2.1)
fansi 1.0.3 2022-03-24 [1] CRAN (R 4.2.1)
fastmap 1.1.0 2021-01-25 [1] CRAN (R 4.2.1)
fs 1.5.2 2021-12-08 [1] CRAN (R 4.2.1)
gdata 2.18.0.1 2022-05-10 [1] CRAN (R 4.2.1)
gdistance * 1.6 2022-10-10 [1] CRAN (R 4.2.2)
generics 0.1.3 2022-07-05 [1] CRAN (R 4.2.1)
glue 1.6.2 2022-02-24 [1] CRAN (R 4.2.1)
goftest 1.2-3 2021-10-07 [1] CRAN (R 4.2.0)
gtools 3.9.4 2022-11-27 [1] CRAN (R 4.2.2)
htmltools 0.5.4 2022-12-07 [1] CRAN (R 4.2.2)
htmlwidgets 1.6.1 2023-01-07 [1] CRAN (R 4.2.2)
httpuv 1.6.6 2022-09-08 [1] CRAN (R 4.2.1)
igraph * 1.3.5 2022-09-22 [1] CRAN (R 4.2.2)
ipdw * 2.0-0 2023-01-05 [1] CRAN (R 4.2.2)
KernSmooth 2.23-20 2021-05-03 [2] CRAN (R 4.2.1)
later 1.3.0 2021-08-18 [1] CRAN (R 4.2.1)
lattice 0.20-45 2021-09-22 [2] CRAN (R 4.2.1)
lifecycle 1.0.3 2022-10-07 [1] CRAN (R 4.2.2)
magrittr 2.0.3 2022-03-30 [1] CRAN (R 4.2.1)
Matrix * 1.5-3 2022-11-11 [1] CRAN (R 4.2.2)
memoise 2.0.1 2021-11-26 [1] CRAN (R 4.2.1)
mgcv 1.8-40 2022-03-29 [2] CRAN (R 4.2.1)
mime 0.12 2021-09-28 [1] CRAN (R 4.2.0)
miniUI 0.1.1.1 2018-05-18 [1] CRAN (R 4.2.1)
nlme * 3.1-157 2022-03-25 [2] CRAN (R 4.2.1)
pillar 1.8.1 2022-08-19 [1] CRAN (R 4.2.1)
pkgbuild 1.3.1 2021-12-20 [1] CRAN (R 4.2.1)
pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.2.1)
pkgload 1.3.2 2022-11-16 [1] CRAN (R 4.2.1)
polyclip 1.10-4 2022-10-20 [1] CRAN (R 4.2.1)
prettyunits 1.1.1 2020-01-24 [1] CRAN (R 4.2.1)
processx 3.8.0 2022-10-26 [1] CRAN (R 4.2.2)
profvis 0.3.7 2020-11-02 [1] CRAN (R 4.2.1)
promises 1.2.0.1 2021-02-11 [1] CRAN (R 4.2.1)
proxy 0.4-27 2022-06-09 [1] CRAN (R 4.2.1)
ps 1.7.2 2022-10-26 [1] CRAN (R 4.2.2)
purrr 0.3.4 2020-04-17 [1] CRAN (R 4.2.1)
R6 2.5.1 2021-08-19 [1] CRAN (R 4.2.1)
raster * 3.6-3 2022-09-18 [1] CRAN (R 4.2.1)
Rcpp 1.0.10 2023-01-22 [1] CRAN (R 4.2.2)
remotes 2.4.2 2021-11-30 [1] CRAN (R 4.2.2)
rgdal 1.6-2 2022-11-09 [1] CRAN (R 4.2.2)
rlang 1.0.6 2022-09-24 [1] CRAN (R 4.2.1)
rpart * 4.1.16 2022-01-24 [2] CRAN (R 4.2.1)
rstudioapi 0.14 2022-08-22 [1] CRAN (R 4.2.1)
sessioninfo 1.2.2 2021-12-06 [1] CRAN (R 4.2.1)
sf * 1.0-9 2022-11-08 [1] CRAN (R 4.2.2)
shiny 1.7.3 2022-10-25 [1] CRAN (R 4.2.2)
sp * 1.5-0 2022-06-05 [1] CRAN (R 4.2.1)
spatstat * 3.0-2 2022-11-10 [1] CRAN (R 4.2.2)
spatstat.data * 3.0-0 2022-10-21 [1] CRAN (R 4.2.2)
spatstat.explore * 3.0-5 2022-11-10 [1] CRAN (R 4.2.2)
spatstat.geom * 3.0-3 2022-10-25 [1] CRAN (R 4.2.2)
spatstat.linnet * 3.0-3 2022-11-15 [1] CRAN (R 4.2.1)
spatstat.model * 3.0-2 2022-11-07 [1] CRAN (R 4.2.2)
spatstat.random * 3.0-1 2022-11-03 [1] CRAN (R 4.2.2)
spatstat.sparse 3.0-0 2022-10-21 [1] CRAN (R 4.2.2)
spatstat.utils 3.0-1 2022-10-19 [1] CRAN (R 4.2.2)
stringi 1.7.8 2022-07-11 [1] CRAN (R 4.2.1)
stringr 1.5.0 2022-12-02 [1] CRAN (R 4.2.2)
tensor 1.5 2012-05-05 [1] CRAN (R 4.2.0)
terra 1.6-17 2022-09-10 [1] CRAN (R 4.2.1)
tibble 3.1.8 2022-07-22 [1] CRAN (R 4.2.1)
tidyselect 1.2.0 2022-10-10 [1] CRAN (R 4.2.2)
units 0.8-0 2022-02-05 [1] CRAN (R 4.2.1)
urlchecker 1.0.1 2021-11-30 [1] CRAN (R 4.2.1)
usethis 2.1.6 2022-05-25 [1] CRAN (R 4.2.1)
utf8 1.2.2 2021-07-24 [1] CRAN (R 4.2.1)
vctrs 0.5.1 2022-11-16 [1] CRAN (R 4.2.1)
xtable 1.8-4 2019-04-21 [1] CRAN (R 4.2.1)
[1] D:/R/win-library/4.0
[2] C:/Program Files/R/R-4.2.1/library
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jsta
commented on August 18, 2024
Can you also post the output of sf::sf_extSoftVersion()?
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egoberville
commented on August 18, 2024
Sure! This is the output:
GEOS GDAL proj.4 GDAL_with_GEOS USE_PROJ_H
"3.9.3" "3.5.2" "8.2.1" "true" "true"
PROJ
"8.2.1"
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jsta
commented on August 18, 2024
Hmm, I couldn't reproduce the error and my dependencies are almost identical except for minor version differences in:
packages.loadedversion
raster 3.6-20
sp 1.6-0
terra 1.7-18Can you try updating those? Probably the easiest way would be to run remotes::install_github("jsta/ipdw")
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Related Issues (20)
- testthat warnings on raster object formation HOT 2
- Reference Stachelek and Madden 2015 in vignette
- Add CRAN badge
- Add resolution argument to costrasterGen
- paramList arg is ambiguous
- ipdw output land area should be masked out as NA
- Add ability to set a custom distance weighting power
- Add ability to drop any areas that have a number of overlapping layers below some threshold
- Save power and range setting in output objects
- Generalize beyond Kattegat
- Check whether paramlist is available before running ipdw
- Show ggplot style outputs in vignette HOT 1
- Explain the projstr parameter on costrasterGen
- Add informative error msg if costrasterGen extent is misspelled as `pols`
- Convert package to sf HOT 1
- costrasterGen CRAN error HOT 1
- Python version of ipdw HOT 2
- Please remove dependencies on **rgdal**, **rgeos**, and/or **maptools** HOT 1
- Questions about pathdistGen() and ipdwInterp() HOT 2
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